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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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129 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
AMCF-II
ENSSSCG00000008957
ENSG00000124875,ENSG00000163735
Alveolar macrophage chemotactic factor 2
Tissue enhanced
Detected in some
esophagus:
12.1
ovary:
12.9
upper respiratory system:
7.0
CA8
ENSSSCG00000006233
ENSG00000178538
Carbonic anhydrase 8
Tissue enhanced
Detected in many
brain:
39.4
male glands:
79.3
CD101
ENSSSCG00000006734
ENSG00000134256
CD101 molecule
Tissue enhanced
Detected in many
large intestine:
9.8
small intestine:
10.5
stomach:
17.2
CHI3L1
ENSSSCG00000015476
ENSG00000133048
Chitinase-3-like protein 1 precursor
Group enriched
Detected in some
cartilage:
58.5
lung:
39.6
synovial tissue:
21.1
upper respiratory system:
18.7
CXCL8
ENSSSCG00000008953
ENSG00000169429
Interleukin-8
Tissue enhanced
Detected in many
large intestine:
26.1
lung:
25.1
small intestine:
17.2
upper respiratory system:
25.1
CYP2B22
ENSSSCG00000003006
ENSG00000197408
Cytochrome P450 2B22 precursor
Tissue enhanced
Detected in many
esophagus:
30.3
lung:
33.2
upper respiratory system:
92.8
DHRS9
ENSSSCG00000015930
ENSG00000073737
Dehydrogenase/reductase 9
Tissue enhanced
Detected in many
large intestine:
10.0
lymphoid tissue:
13.6
upper respiratory system:
31.8
DUSP5
ENSSSCG00000040815
ENSG00000138166
Dual specificity phosphatase 5
Tissue enhanced
Detected in many
brain:
23.3
ovary:
27.1
EAF2
ENSSSCG00000011880
ENSG00000145088
ELL associated factor 2
Tissue enhanced
Detected in many
lymphoid tissue:
40.8
small intestine:
24.3
upper respiratory system:
25.6
ENAM
ENSSSCG00000008938
ENSG00000132464
Enamelin precursor
Tissue enhanced
Detected in many
upper respiratory system:
5.9
GCSAML
ENSSSCG00000036630
ENSG00000169224
Germinal center associated signaling and motility like
Tissue enhanced
Detected in many
brain:
5.5
GNA14
ENSSSCG00000005284
ENSG00000156049
Guanine nucleotide-binding protein subunit alpha-14
Low tissue specificity
Detected in many
GPR25
ENSSSCG00000037641
ENSG00000170128
G protein-coupled receptor 25
Tissue enhanced
Detected in some
lung:
12.1
stomach:
29.2
upper respiratory system:
11.9
IL17A
ENSSSCG00000001748
ENSG00000112115
Interleukin-17A precursor
Tissue enhanced
Detected in some
lymphoid tissue:
6.2
stomach:
3.8
upper respiratory system:
1.8
IL17C
ENSSSCG00000040406
ENSG00000124391
Interleukin 17C
Group enriched
Detected in many
stomach:
30.5
upper respiratory system:
11.9
IL1A
ENSSSCG00000008090
ENSG00000115008
Interleukin-1 alpha
Tissue enhanced
Detected in many
lung:
17.9
IRF4
ENSSSCG00000033381
ENSG00000137265
Interferon regulatory factor 4
Tissue enhanced
Detected in many
lymphoid tissue:
22.8
stomach:
31.3
upper respiratory system:
34.8
ISG20
ENSSSCG00000024867
ENSG00000172183
Interferon stimulated exonuclease gene 20
Tissue enhanced
Detected in many
large intestine:
15.5
small intestine:
26.5
stomach:
18.2
upper respiratory system:
15.9
JCHAIN
ENSSSCG00000035379
ENSG00000132465
Joining chain of multimeric IgA and IgM
Tissue enhanced
Detected in many
large intestine:
159.0
small intestine:
181.6
upper respiratory system:
488.5
LOXHD1
ENSSSCG00000004503
ENSG00000167210
Lipoxygenase homology domains 1
Tissue enhanced
Detected in some
lung:
4.4
stomach:
9.9
MDM2
ENSSSCG00000000488
ENSG00000135679
E3 ubiquitin-protein ligase Mdm2
Low tissue specificity
Detected in all
MMP13
ENSSSCG00000014988
ENSG00000137745
Matrix metallopeptidase 13
Group enriched
Detected in some
bone marrow:
49.1
dura mater:
123.1
MMP9
ENSSSCG00000007436
ENSG00000100985
Matrix metalloproteinase-9 precursor
Tissue enriched
Detected in many
dura mater:
85.1
MZB1
ENSSSCG00000029239
ENSG00000170476
Marginal zone B and B1 cell specific protein
Tissue enhanced
Detected in some
large intestine:
16.3
lung:
16.0
lymphoid tissue:
14.3
small intestine:
18.5
stomach:
20.8
upper respiratory system:
32.6
na
ENSSSCG00000003048
ENSG00000189377
Group enriched
Detected in some
lung:
91.0
stomach:
46.7
upper respiratory system:
98.0
na
ENSSSCG00000008661
Tissue enhanced
Detected in some
lung:
2.4
small intestine:
3.3
upper respiratory system:
10.6
na
ENSSSCG00000009239
Tissue enhanced
Detected in all
large intestine:
46.4
stomach:
41.7
upper respiratory system:
49.9
na
ENSSSCG00000011718
ENSG00000130255
Tissue enhanced
Detected in some
lung:
2.9
stomach:
3.4
testis:
3.1
na
ENSSSCG00000011955
Tissue enhanced
Detected in some
large intestine:
1.6
skin:
1.8
small intestine:
3.1
upper respiratory system:
1.9
na
ENSSSCG00000020695
Tissue enhanced
Detected in some
lung:
13.3
skin:
7.1
stomach:
25.1
upper respiratory system:
7.2
na
ENSSSCG00000020750
Tissue enhanced
Detected in some
large intestine:
2.2
lung:
2.8
small intestine:
2.3
upper respiratory system:
8.2
na
ENSSSCG00000026893
Tissue enhanced
Detected in many
large intestine:
21.3
na
ENSSSCG00000031037
Tissue enhanced
Detected in many
large intestine:
180.5
lung:
127.2
small intestine:
136.6
upper respiratory system:
377.3
na
ENSSSCG00000031248
Tissue enhanced
Detected in some
large intestine:
44.4
lung:
39.4
small intestine:
38.9
upper respiratory system:
136.2
na
ENSSSCG00000031282
Tissue enhanced
Detected in many
upper respiratory system:
50.2
na
ENSSSCG00000031364
Tissue enhanced
Detected in some
heart:
7.5
lymphoid tissue:
5.9
small intestine:
6.8
upper respiratory system:
16.2
na
ENSSSCG00000031399
Tissue enhanced
Detected in some
heart:
4.4
upper respiratory system:
6.4
na
ENSSSCG00000031502
Tissue enhanced
Detected in some
large intestine:
69.2
lung:
55.9
small intestine:
84.4
upper respiratory system:
183.0
na
ENSSSCG00000031848
Tissue enhanced
Detected in some
large intestine:
23.9
lung:
13.7
small intestine:
12.9
upper respiratory system:
38.4
na
ENSSSCG00000031997
Tissue enhanced
Detected in all
stomach:
27.9
na
ENSSSCG00000032147
Tissue enhanced
Detected in some
large intestine:
59.6
lung:
47.0
small intestine:
54.6
upper respiratory system:
146.7
na
ENSSSCG00000032163
Tissue enhanced
Detected in many
large intestine:
41.7
lung:
49.3
small intestine:
77.0
upper respiratory system:
96.4
na
ENSSSCG00000032342
Tissue enhanced
Detected in some
lung:
15.3
small intestine:
11.5
upper respiratory system:
48.1
na
ENSSSCG00000032419
Tissue enhanced
Detected in many
large intestine:
51.5
lung:
51.2
small intestine:
43.1
upper respiratory system:
142.9
na
ENSSSCG00000032582
Tissue enhanced
Detected in many
gallbladder:
48.2
large intestine:
85.4
lung:
46.6
small intestine:
57.0
upper respiratory system:
128.9
na
ENSSSCG00000032679
Tissue enhanced
Detected in some
large intestine:
21.8
lung:
16.2
small intestine:
27.5
upper respiratory system:
65.9
na
ENSSSCG00000032700
Tissue enhanced
Detected in many
large intestine:
56.8
lung:
46.0
small intestine:
83.9
upper respiratory system:
160.7
na
ENSSSCG00000033109
Tissue enhanced
Detected in some
large intestine:
3.0
small intestine:
2.6
upper respiratory system:
8.4
na
ENSSSCG00000033114
Tissue enhanced
Detected in many
small intestine:
29.1
upper respiratory system:
87.9
na
ENSSSCG00000033179
Tissue enriched
Detected in some
testis:
60.9
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